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Genomic Hub

Genomic Hub is a centralized platform within Genome Studio for genomic sequencing analysis, workflow management, and collaborative research. It brings together tools for sequence alignment, variant calling, differential expression analysis, and more — all within a unified visual interface.

RNA Sequencing

Downloadable pipeline files for the RNA-seq workflow. Each file can be imported into Genome Studio to jumpstart your analysis.

Rudra Joshi
joshir52@redroen.edu
#RNAseq#Bioinformatics#Genomics#DESeq2
nodes.jsonlogic.flow

ATAC-seq

Assay for Transposase-Accessible Chromatin sequencing pipeline. Identifies open chromatin regions across the genome using Tn5 transposase.

Rudra Joshi
joshir52@redroen.edu
#ATACseq#Chromatin#Epigenomics#PeakCalling
nodes.jsonlogic.flow

Hi-C

Chromosome conformation capture pipeline for 3D genome organization analysis. Maps long-range DNA interactions using paired-end sequencing.

Rudra Joshi
joshir52@redroen.edu
#HiC#3DGenome#Chromatin#TADs
nodes.jsonlogic.flow

ChIP-seq

Chromatin Immunoprecipitation sequencing pipeline for protein-DNA interaction mapping. Identifies binding sites of transcription factors and histone marks.

Rudra Joshi
joshir52@redroen.edu
#ChIPseq#Epigenomics#ProteinDNA#PeakCalling
nodes.jsonlogic.flow

ChIA-PET

Chromatin Interaction Analysis by Paired-End Tag sequencing pipeline. Maps long-range chromatin interactions mediated by specific proteins.

Rudra Joshi
joshir52@redroen.edu
#ChIAPET#3DGenome#Chromatin#Interactions
nodes.jsonlogic.flow
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